Summary: The third session dives into coding and software tools for bioinformatics. Participants will practice Python fundamentals, explore Google Colab for biological data analysis, and learn how to perform in silico cloning using Benchling.
Cost for Attendance: $33 (payment links @ door or in advance to @elliot-roth // @thatmre)
Python Fundamentals & Colab (60 min)
Subtopics: Fundamentals of Python, Basic Syntax, Setting up Colab
Colab Examples and AI Tools (45 min)
Subtopics: From Code to Lab: Practical Applications with CoLab & Opentrons
Benchling Basics (60 min)
Subtopics: Reading DNA sequences, in silico cloning by scenario, essential Benchling features
Accessible Biolabs (15 min)
Subtopics: Setting up labs with limited resources, accessible protocols for external students
Slides: https://drive.google.com/drive/u/0/folders/12kdCFoHJ2Wrj58xG-MoJl8dHMDx8l2A3
Supporting Colabs:
Walkthrough: Python-Basics-HTGAA-Bootcamp-2025.ipynb
Example 1: Rosetta: (Remake) - L-Protein - Point-Mutation-Scan.ipynb
Example 2: Opentrons Lab: HTGAA25 Opentrons Colab
Part 2: Python-HTGAA-Bootcamp-2025.ipynb
Part 2 Opentrons:HTGAA25 Opentrons Bare Code
AI tools:
**📝**Connected Papers: https://www.connectedpapers.com/
**📝**Research Rabbit: https://www.researchrabbit.ai/
Benchling Example Project: 📝Benchling Basics
